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Genetics Home Reference: your guide to understanding genetic conditions
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ARX

Reviewed August 2012

What is the official name of the ARX gene?

The official name of this gene is “aristaless related homeobox.”

ARX is the gene's official symbol. The ARX gene is also known by other names, listed below.

What is the normal function of the ARX gene?

The ARX gene provides instructions for producing a protein that regulates the activity of other genes. On the basis of this action, the ARX protein is called a transcription factor. The ARX gene is part of a larger family of homeobox genes, which act during early embryonic development to control the formation of many body structures. Specifically, the ARX protein is believed to be involved in the development of the pancreas, gastrointestinal tract, testes, and brain. The ARX protein is thought to play a role in the migration of specialized nerve cells, called interneurons, to their proper location in the developing brain. Interneurons relay signals between other nerve cells (neurons).

Does the ARX gene share characteristics with other genes?

The ARX gene belongs to a family of genes called homeobox (homeoboxes).

A gene family is a group of genes that share important characteristics. Classifying individual genes into families helps researchers describe how genes are related to each other. For more information, see What are gene families? (http://ghr.nlm.nih.gov/handbook/howgeneswork/genefamilies) in the Handbook.

How are changes in the ARX gene related to health conditions?

X-linked infantile spasm syndrome - caused by mutations in the ARX gene

Mutations in the ARX gene can cause X-linked infantile spasm syndrome, a disorder characterized by recurrent seizures called infantile spasms that begin in the first year of life. Children with this condition also have intellectual disability. The normal ARX protein contains four regions where a protein building block (amino acid) called alanine is repeated multiple times. These stretches of alanines are known as polyalanine tracts. The most common ARX gene mutations that cause X-linked infantile spasm syndrome add extra alanines to the first or second polyalanine tract in the ARX protein. This type of mutation is called a polyalanine repeat expansion. How these expansions lead to X-linked infantile spasms is unknown. Other ARX gene mutations that cause this condition are believed to reduce the function of the ARX protein. However, it is unclear how a decrease in ARX protein function leads to seizures and intellectual disability.

X-linked lissencephaly - caused by mutations in the ARX gene

There are more than 20 mutations in the ARX gene that cause X-linked lissencephaly with abnormal (ambiguous) genitalia. These mutations usually lead to the production of a nonfunctional ARX protein or no ARX protein at all. As a result, the ARX protein cannot perform its role in regulating the activity of certain genes. In addition to impairing normal brain development, a shortage of functional ARX protein can also disrupt normal function in the pancreas and the testes, leading to the signs and symptoms of X-linked lissencephaly with ambiguous genitalia.

other disorders - caused by mutations in the ARX gene

Different mutations in the ARX gene can cause a variety of conditions that impair brain function. Some ARX gene mutations result in intellectual disability without other neurological problems. Because the ARX gene is on the X chromosome, this condition is known as X-linked intellectual disability (XLID) or sometimes nonsyndromic X-linked intellectual disability. XLID can also occur in combination with other neurological problems as part of distinct conditions called X-linked intellectual disability syndromes. ARX gene mutations cause several X-linked intellectual disability syndromes, including X-linked lissencephaly with ambiguous genitalia and X-linked infantile spasm syndrome (described above). Others include X-linked myoclonic epilepsy with intellectual disability and spasticity, which causes intellectual disability and recurrent seizures (epilepsy), and Partington syndrome, which is characterized by mild to moderate intellectual disability and abnormal muscle stiffness (spasticity) with involuntary tensing of the muscles (dystonia). Unlike X-linked lissencephaly, none of these other ARX-related conditions have associated structural brain abnormalities. For unknown reasons, the same mutation can result in the development of different conditions in different people, even among individuals within the same family. It is not clear why mutations in the ARX gene cause this array of conditions.

Where is the ARX gene located?

Cytogenetic Location: Xp21.3

Molecular Location on the X chromosome: base pairs 25,021,810 to 25,034,064

The ARX gene is located on the short (p) arm of the X chromosome at position 21.3.

The ARX gene is located on the short (p) arm of the X chromosome at position 21.3.

More precisely, the ARX gene is located from base pair 25,021,810 to base pair 25,034,064 on the X chromosome.

See How do geneticists indicate the location of a gene? (http://ghr.nlm.nih.gov/handbook/howgeneswork/genelocation) in the Handbook.

Where can I find additional information about ARX?

You and your healthcare professional may find the following resources about ARX helpful.

You may also be interested in these resources, which are designed for genetics professionals and researchers.

What other names do people use for the ARX gene or gene products?

  • aristaless-related homeobox, X-linked
  • ARX_HUMAN
  • ISSX
  • MRX29
  • MRX32
  • MRX33
  • MRX36
  • MRX38
  • MRX43
  • MRX54
  • MRXS1
  • PRTS

See How are genetic conditions and genes named? (http://ghr.nlm.nih.gov/handbook/mutationsanddisorders/naming) in the Handbook.

What glossary definitions help with understanding ARX?

amino acid ; chromosome ; dystonia ; embryonic ; gastrointestinal ; gene ; genitalia ; homeobox ; involuntary ; mental retardation ; mutation ; neurological ; pancreas ; protein ; spasticity ; syndrome ; testes ; transcription ; transcription factor

You may find definitions for these and many other terms in the Genetics Home Reference Glossary (http://www.ghr.nlm.nih.gov/glossary).

References

  • Bonneau D, Toutain A, Laquerričre A, Marret S, Saugier-Veber P, Barthez MA, Radi S, Biran-Mucignat V, Rodriguez D, Gélot A. X-linked lissencephaly with absent corpus callosum and ambiguous genitalia (XLAG): clinical, magnetic resonance imaging, and neuropathological findings. Ann Neurol. 2002 Mar;51(3):340-9. (http://www.ncbi.nlm.nih.gov/pubmed/11891829?dopt=Abstract)
  • Entrez Gene (http://www.ncbi.nlm.nih.gov/gene/170302)
  • Forman MS, Squier W, Dobyns WB, Golden JA. Genotypically defined lissencephalies show distinct pathologies. J Neuropathol Exp Neurol. 2005 Oct;64(10):847-57. (http://www.ncbi.nlm.nih.gov/pubmed/16215456?dopt=Abstract)
  • Gécz J, Cloosterman D, Partington M. ARX: a gene for all seasons. Curr Opin Genet Dev. 2006 Jun;16(3):308-16. Epub 2006 May 2. Review. (http://www.ncbi.nlm.nih.gov/pubmed/16650978?dopt=Abstract)
  • Guerrini R, Moro F, Kato M, Barkovich AJ, Shiihara T, McShane MA, Hurst J, Loi M, Tohyama J, Norci V, Hayasaka K, Kang UJ, Das S, Dobyns WB. Expansion of the first PolyA tract of ARX causes infantile spasms and status dystonicus. Neurology. 2007 Jul 31;69(5):427-33. (http://www.ncbi.nlm.nih.gov/pubmed/17664401?dopt=Abstract)
  • Kato M, Dobyns WB. X-linked lissencephaly with abnormal genitalia as a tangential migration disorder causing intractable epilepsy: proposal for a new term, "interneuronopathy". J Child Neurol. 2005 Apr;20(4):392-7. (http://www.ncbi.nlm.nih.gov/pubmed/15921244?dopt=Abstract)
  • Nasrallah IM, Minarcik JC, Golden JA. A polyalanine tract expansion in Arx forms intranuclear inclusions and results in increased cell death. J Cell Biol. 2004 Nov 8;167(3):411-6. (http://www.ncbi.nlm.nih.gov/pubmed/15533998?dopt=Abstract)
  • Olivetti PR, Noebels JL. Interneuron, interrupted: molecular pathogenesis of ARX mutations and X-linked infantile spasms. Curr Opin Neurobiol. 2012 Oct;22(5):859-65. doi: 10.1016/j.conb.2012.04.006. Epub 2012 May 5. Review. (http://www.ncbi.nlm.nih.gov/pubmed/22565167?dopt=Abstract)
  • OMIM: ARISTALESS-RELATED HOMEOBOX, X-LINKED (http://omim.org/entry/300382)
  • Sherr EH. The ARX story (epilepsy, mental retardation, autism, and cerebral malformations): one gene leads to many phenotypes. Curr Opin Pediatr. 2003 Dec;15(6):567-71. Review. (http://www.ncbi.nlm.nih.gov/pubmed/14631200?dopt=Abstract)
  • Shoubridge C, Cloosterman D, Parkinson-Lawerence E, Brooks D, Gécz J. Molecular pathology of expanded polyalanine tract mutations in the Aristaless-related homeobox gene. Genomics. 2007 Jul;90(1):59-71. Epub 2007 May 9. (http://www.ncbi.nlm.nih.gov/pubmed/17490853?dopt=Abstract)
  • Shoubridge C, Fullston T, Gécz J. ARX spectrum disorders: making inroads into the molecular pathology. Hum Mutat. 2010 Aug;31(8):889-900. doi: 10.1002/humu.21288. Review. (http://www.ncbi.nlm.nih.gov/pubmed/20506206?dopt=Abstract)
  • Strřmme P, Mangelsdorf ME, Shaw MA, Lower KM, Lewis SM, Bruyere H, Lütcherath V, Gedeon AK, Wallace RH, Scheffer IE, Turner G, Partington M, Frints SG, Fryns JP, Sutherland GR, Mulley JC, Gécz J. Mutations in the human ortholog of Aristaless cause X-linked mental retardation and epilepsy. Nat Genet. 2002 Apr;30(4):441-5. Epub 2002 Mar 11. (http://www.ncbi.nlm.nih.gov/pubmed/11889467?dopt=Abstract)
  • Uyanik G, Aigner L, Martin P, Gross C, Neumann D, Marschner-Schäfer H, Hehr U, Winkler J. ARX mutations in X-linked lissencephaly with abnormal genitalia. Neurology. 2003 Jul 22;61(2):232-5. (http://www.ncbi.nlm.nih.gov/pubmed/12874405?dopt=Abstract)

 

The resources on this site should not be used as a substitute for professional medical care or advice. Users seeking information about a personal genetic disease, syndrome, or condition should consult with a qualified healthcare professional. See How can I find a genetics professional in my area? (http://ghr.nlm.nih.gov/handbook/consult/findingprofessional) in the Handbook.

 
Reviewed: August 2012
Published: May 20, 2013